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ACTINOMYCIN D BINDING TO CGATCGATCG
 
 
DOI:10.2210/pdb1i3w/pdb   NDB ID: DD0039
1I3W
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 13624.73
     
    Molecule:5'-D(*C*GP*AP*TP*CP*GP*AP*(BRU)P*CP*G)-3'
    Polymer:1Type:polydeoxyribonucleotideLength:10
    Chains:A, B, C, D
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    DPR     D-PROLINE C5 H9 N O2 3DLigand Explorer Link out to Ligand Expos:DPR Link out to SuperLigands:DPR Link out to SuperHapten:DPR
    DVA     D-VALINE C5 H11 N O2 3DLigand Explorer Link out to Ligand Expos:DVA Link out to SuperLigands:DVA Link out to SuperHapten:DVA
    MVA     N-METHYLVALINE C6 H13 N O2 3DLigand Explorer Link out to Ligand Expos:MVA Link out to SuperLigands:MVA Link out to SuperHapten:MVA
    PXZ     2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO- PHENOXAZIN-3-ONE C16 H12 N2 O4 3DLigand Explorer Link out to Ligand Expos:PXZ Link out to SuperLigands:PXZ Link out to SuperHapten:PXZ
    SAR     SARCOSINE C3 H7 N O2 3DLigand Explorer Link out to Ligand Expos:SAR Link out to SuperLigands:SAR Link out to SuperHapten:SAR
    THR     THREONINE C4 H9 N O3 3DLigand Explorer Link out to Ligand Expos:THR Link out to SuperLigands:THR Link out to SuperHapten:THR
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE (parent: DU)(type: dnaLinking) C9 H12 Br N2 O8 P Link out to Ligand Expos:BRU Link out to SuperLigands:BRU Link out to SuperHapten:BRU 2D
    DVA D-VALINE(type: dPeptideLinking) C5 H11 N O2 Link out to Ligand Expos:DVA Link out to SuperLigands:DVA Link out to SuperHapten:DVA 2D
    THR THREONINE(type: lPeptideLinking) C4 H9 N O3 Link out to Ligand Expos:THR Link out to SuperLigands:THR Link out to SuperHapten:THR 2D
    MVA N-METHYLVALINE (parent: VAL)(type: lPeptideLinking) C6 H13 N O2 Link out to Ligand Expos:MVA Link out to SuperLigands:MVA Link out to SuperHapten:MVA 2D
    SAR SARCOSINE (parent: GLY)(type: glycine) C3 H7 N O2 Link out to Ligand Expos:SAR Link out to SuperLigands:SAR Link out to SuperHapten:SAR 2D
    DPR D-PROLINE(type: dPeptideLinking) C5 H9 N O2 Link out to Ligand Expos:DPR Link out to SuperLigands:DPR Link out to SuperHapten:DPR 2D
     
     
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< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Robinson, H.,   Gao, Y.-G.,   Yang, X.-L.,   Sanishvili, R.,   Joachimiak, A.,   Wang, A.H.-J.

    Deposition:   2001-02-17
    Release:   2001-05-21
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 1.70
    R-Value: 0.237 (obs.)
    R-Free: 0.279
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 47.01 α = 90.00 
    b = 47.01 β = 90.00 
    c = 160.37 γ = 90.00