1I29

CRYSTAL STRUCTURE OF CSDB COMPLEXED WITH L-PROPARGYLGLYCINE

Structural Biology Knowledgebase: 1I29 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1I29

Classification: LYASE

Total Structure Weight: 44827.26

Macromolecule Entities
Molecule Chains Length Organism Details
CSDB A 406 Escherichia coli EC#: 2.8.1.7 IUBMB
Gene Name(s): sufS csdB ynhB b1680 JW1670
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LPG
Query on LPG

A L-PROPARGYLGLYCINE
2-AMINO-BUT-3-YNOIC ACID (Synonym)
C4 H5 N O2
DSUAJFIEKRKPEE-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.209
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 128.46 α = 90.00
b = 128.46 β = 90.00
c = 136.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-07
  • Released Date: 2003-07-01
  • Deposition author(s): Mihara, H., Fujii, T., Kurihara, T., Hata, Y., Esaki, N.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4