1HWO

EBULIN COMPLEXED WITH LACTOSE, TRIGONAL CRYSTAL FORM

Structural Biology Knowledgebase: 1HWO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.339
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 1HWO

Classification: HYDROLASE

Total Structure Weight: 58786.11

Macromolecule Entities
Molecule Chains Length Organism Details
EBULIN A 254 Sambucus ebulus EC#: 3.2.2.22 IUBMB
Details: N-GLYCOSIDASE
Gene Name(s): ebu1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
EBULIN B 266 Sambucus ebulus EC#: 3.2.2.22 IUBMB
Details: GALACTOSIDE SPECIFIC LECTIN
Gene Name(s): ebu1

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

B ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

B BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.339
  • R-Value Work: 0.237
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.00 α = 90.00
b = 74.00 β = 90.00
c = 191.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-09
  • Released Date: 2001-01-24
  • Deposition author(s): Pascal, J.M., Day, P.J., Monzingo, A.F., Ernst, S.R., Robertus, J.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update