1HUO

CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP

Structural Biology Knowledgebase: 1HUO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1HUO

Classification: TRANSFERASE / DNA

Total Structure Weight: 88806.03


Macromolecule Entities
Molecule Chains Length Organism Details
DNA POLYMERASE BETA A, B 335 Rattus norvegicus EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Gene Name(s): Polb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3' C, T 11 synthetic
5'-D(P*CP*GP*AP*CP*GP*CP*C)-3' D, P 7 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TTE
Query on TTE

A, B PHOSPHOMETHYL PHOSPHONIC ACID DEOXYTHYMIDYLATE ESTER
C11 H19 N2 O13 P3
HEDAITKJNKXWIZ-DJLDLDEBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CR
Query on CR

A, B CHROMIUM ION
Cr
BFGKITSFLPAWGI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.226
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 105.91 α = 90.00
b = 56.16 β = 107.25
c = 86.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-04
  • Released Date: 2001-04-23
  • Deposition author(s): Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.
  • Previous versions: 1CF6

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4