1HQD

PSEUDOMONAS CEPACIA LIPASE COMPLEXED WITH TRANSITION STATE ANALOGUE OF 1-PHENOXY-2-ACETOXY BUTANE

Structural Biology Knowledgebase: 1HQD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.154

Literature

Macromolecules
Sequence Display for 1HQD

Classification: HYDROLASE

Total Structure Weight: 33453.79

Macromolecule Entities
Molecule Chains Length Organism Details
LIPASE A 320 Burkholderia cepacia EC#: 3.1.1.3 IUBMB
Mutation: A2D, G3N, S18T, N40R, S92T, D125G, S137T, H154N, Q165K, R171Q, L218I, L232I, V240A, L243P, I256V, L266V, K276Q, Y300N
Gene Name(s): lipA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
INK
Query on INK

A (RP,SP)-O-(2R)-(1-PHENOXYBUT-2-YL)-METHYLPHOSPHONIC ACID CHLORIDE
C11 H16 Cl O3 P
YEIXDWIEYXZUBR-QLJPJBMISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.154
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.06 α = 90.00
b = 46.63 β = 120.86
c = 84.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-12-15
  • Released Date: 2001-08-22
  • Deposition author(s): Luic, M., Tomic, S., Lescic, I., Ljubovic, E., Sepac, D., Sunjic, V., Vitale, L., Saenger, W., Kojic-Prodic, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4