1HLZ

CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT

Structural Biology Knowledgebase: 1HLZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 1HLZ

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 34333.68


Macromolecule Entities
Molecule Chains Length Organism Details
ORPHAN NUCLEAR RECEPTOR NR1D1 A, B 94 Homo sapiens Fragment: DNA-BINDING DOMAIN PLUS C-TERMINAL EXTENSION
Gene Name(s): NR1D1 Gene View EAR1 HREV THRAL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3' C 20 synthetic
5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3' D 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.260
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 35.87 α = 84.13
b = 39.60 β = 72.09
c = 58.56 γ = 70.20

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-12-04
  • Released Date: 2001-11-16
  • Deposition author(s): Sierk, M.L., Zhao, Q., Rastinejad, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4