1HI0

RNA DEPENDENT RNA POLYMERASE FROM DSRNA BACTERIOPHAGE PHI6 PLUS INITIATION COMPLEX

Structural Biology Knowledgebase: 1HI0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1HI0

Classification: RNA POLYMERASE

Total Structure Weight: 232499.31


Macromolecule Entities
Molecule Chains Length Organism Details
P2 PROTEIN P, Q, R 664 Pseudomonas phage phi6 EC#: 2.7.7.48 IUBMB
Mutation: I456M
Gene Name(s): P2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-(*TP*TP*TP*CP*C)-3') D, E, F 5 synthetic 5 NUCLEOTIDE DNA VERSION OF OPTIMUM RNA TEMPLATE

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

P, Q, R GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

P, Q, R MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

P, Q, R MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.214
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 105.65 α = 90.00
b = 92.70 β = 101.09
c = 140.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-12-31
  • Released Date: 2001-03-27
  • Deposition author(s): Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4