1HHU

Balhimycin in complex with D-Ala-D-Ala

Structural Biology Knowledgebase: 1HHU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.89 Å
  • R-Value Observed: 0.083

Literature

Macromolecules
Sequence Display for 1HHU

Classification: ANTIBIOTIC

Total Structure Weight: 7939.12

Macromolecule Entities
Molecule Chains Length Organism Details
BALHIMYCIN A, B, C, D 7 Amycolatopsis sp.

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A, B CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

A, B, C, D BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DVC
Query on DVC

A, B, C, D (2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5- triol
C7 H15 N O4
ATGUYZRYRGIDLC-JKUQZMGJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A, B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DAL
Query on DAL

A, B, C, D D-ALANINE
C3 H7 N O2
QNAYBMKLOCPYGJ-UWTATZPHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000484
Query on PRD_000484
A, B, C, D Balhimycin Glycopeptide /
Antibiotic, Antimicrobial
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.89 Å
  • R-Value Observed: 0.083
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 22.70 α = 90.00
b = 27.99 β = 93.18
c = 44.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-12-28
  • Released Date: 2003-09-05
  • Deposition author(s): Lehmann, C., Bunkoczi, G., Sheldrick, G.M., Vertessy, L.

Revision History

  • 2013-03-06
    Type: Other | Details: Add PRD info
  • 2013-02-06
    Type: Atom nomenclature | Details: HETATM
  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2012-07-25
    Type: Other | Details: ANISOU, REMARK 610
  • 2012-07-25
    Type: Binding sites and description | Details: SITE, REMARK 800
  • 2012-07-25
    Type: Non-polymer description | Details: HETNAM, HET
  • 2012-07-25
    Type: Atom nomenclature | Details: HETATM
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature