1HD2

Human peroxiredoxin 5

Structural Biology Knowledgebase: 1HD2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.132

Literature

Macromolecules
Sequence Display for 1HD2

Classification: ANTIOXIDANT ENZYME

Total Structure Weight: 17441.30

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXIREDOXIN 5 RESIDUES 54-214 A 161 Homo sapiens EC#: 1.11.1.15 IUBMB
Fragment: RESIDUES 54-214
Gene Name(s): PRDX5 Gene View ACR1 SBBI10
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BEZ
Query on BEZ

A BENZOIC ACID
C7 H6 O2
WPYMKLBDIGXBTP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BR
Query on BR

A BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.132
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.61 α = 90.00
b = 66.61 β = 90.00
c = 123.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-06
  • Released Date: 2001-08-28
  • Deposition author(s): Declercq, J.P., Evrard, C.

Revision History

  • 2015-04-15
    Type: Biological assembly | Details: REMARK 350
  • 2015-04-15
    Type: Source and taxonomy | Details: SOURCE
  • 2015-04-15
    Type: Other | Details: REMARK 525
  • 2015-04-15
    Type: Non-polymer description | Details: FORMUL
  • 2015-04-15
    Type: Version format compliance | Details: REMARK 4
  • 2015-04-15
    Type: Citation | Details: JRNL
  • 2015-04-15
    Type: Sequence database correspondence | Details: DBREF
  • 2015-04-15
    Type: Data collection | Details: REMARK 200