1H9P

Crystal Structure of Dioclea guianensis Seed Lectin

Structural Biology Knowledgebase: 1H9P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 1H9P

Classification: LECTIN

Total Structure Weight: 25953.31

Macromolecule Entities
Molecule Chains Length Organism Details
LECTIN ALPHA CHAIN A 237 Dioclea guianensis Mutation: G190S
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.239
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.31 α = 90.00
b = 90.31 β = 90.00
c = 108.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-03-16
  • Released Date: 2001-03-23
  • Deposition author(s): Romero, A., Wah, D.A., Gallego Del sol, F., Cavada, B.S., Ramos, M.V., Grangeiro, T.B., Sampaio, A.H., Calvete, J.J.

Revision History

  • 2014-02-05
    Type: Atom nomenclature | Details: ATOM
  • 2014-02-05
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2014-02-05
    Type: Version format compliance | Details: REMARK 4
  • 2014-02-05
    Type: Refinement description | Details: REMARK 3
  • 2014-02-05
    Type: Other | Details: REMARK 375,REMARK 465,REMARK 470,REMARK 525
  • 2014-02-05
    Type: Non-polymer description | Details: FORMUL
  • 2014-02-05
    Type: Geometry validation | Details: REMARK 500
  • 2014-02-05
    Type: Polymer description | Details: COMPND
  • 2014-02-05
    Type: Source and taxonomy | Details: SOURCE