1H83

STRUCTURE OF POLYAMINE OXIDASE IN COMPLEX WITH 1,8-DIAMINOOCTANE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1H83

Classification: OXIDOREDUCTASE

Total Structure Weight: 165736.52

Macromolecule Entities
Molecule Chains Length Organism Details
POLYAMINE OXIDASE A, B, C 472 Zea mays EC#: 1.5.3.14 IUBMB 1.5.3.15 IUBMB
Fragment: FAD-BINDING DOMAIN
Gene Name(s): PAO
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

C ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FCA
Query on FCA

C ALPHA-D-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-PHYPRBDBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DIA
Query on DIA

A, B, C OCTANE 1,8-DIAMINE
1,8-DIAMINOOCTANE; OCTAMETHYLENEDIAMINE; 1,8- OCTANEDIAMINE (Synonym)
C8 H20 N2
PWGJDPKCLMLPJW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DIA Ki: 300 nM (100) BindingDB

Ki: 300 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.196
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 184.69 α = 90.00
b = 184.69 β = 90.00
c = 282.22 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-24
  • Released Date: 2001-01-31
  • Deposition author(s): Binda, C., Coda, A., Angelini, R., Federico, R., Ascenzi, P., Mattevi, A.

Revision History

  • Version 1_0: 2001-01-31

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance