1H5V

THIOPENTASACCHARIDE COMPLEX OF THE ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHARENS AT 1.1 A RESOLUTION IN THE TETRAGONAL CRYSTAL FORM

Structural Biology Knowledgebase: 1H5V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.138
  • R-Value Work: 0.120

Literature

Macromolecules
Sequence Display for 1H5V

Classification: HYDROLASE

Total Structure Weight: 35560.34

Macromolecule Entities
Molecule Chains Length Organism Details
ENDOGLUCANASE 5A A 304 [bacillus] agaradhaerens EC#: 3.2.1.4 IUBMB
Fragment: CATALYTIC CORE DOMAIN RESIDUES 27-331
Gene Name(s): cel5A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SSG
Query on SSG

A 1,4-DEOXY-1,4-DITHIO-BETA-D-GLUCOPYRANOSE
C6 H12 O4 S2
MUOMBPNNVXJUGT-UKFBFLRUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MA3
Query on MA3

A O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-GLUCOSE
C7 H14 O5 S
PFROTWRHYMLGHR-GKHCUFPYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SGC
Query on SGC

A 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE
C6 H12 O5 S
KGSURTOFVLAWDC-QZABAPFNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.138
  • R-Value Work: 0.120
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 75.17 α = 90.00
b = 75.17 β = 90.00
c = 135.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-28
  • Released Date: 2002-05-23
  • Deposition author(s): Varrot, A., Sulzenbacher, G., Schulein, M., Driguez, H., Davies, G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4