1H5E

X-RAY INDUCED REDUCTION OF HORSERADISH PEROXIDASE C1A COMPOUND III (11-22% DOSE)

Structural Biology Knowledgebase: 1H5E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1H5E

Classification: OXIDOREDUCTASE

Total Structure Weight: 34704.11

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXIDASE C1A A 308 Armoracia rusticana EC#: 1.11.1.7 IUBMB
Gene Name(s): PRXC1A HPRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.194
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.32 α = 90.00
b = 67.39 β = 90.00
c = 117.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-21
  • Released Date: 2002-05-27
  • Deposition author(s): Berglund, G.I., Carlsson, G.H., Hajdu, J., Smith, A.T., Szoke, H., Henriksen, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4