1H2A

SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS

Structural Biology Knowledgebase: 1H2A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1H2A

Classification: OXIDOREDUCTASE

Total Structure Weight: 98135.38

Macromolecule Entities
Molecule Chains Length Organism Details
HYDROGENASE S 317 Desulfovibrio vulgaris EC#: 1.12.2.1 IUBMB
Gene Name(s): hydA DvMF_0271
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HYDROGENASE L 567 Desulfovibrio vulgaris EC#: 1.12.2.1 IUBMB
Gene Name(s): hydB DvMF_0270
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SF4
Query on SF4

S IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
F3S
Query on F3S

S FE3-S4 CLUSTER
Fe3 S4
FCXHZBQOKRZXKS-MZMDZPPWAW
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NFE
Query on NFE

L NI-FE ACTIVE CENTER
C2 H Fe Ni O3 S2
BWHVFYQLNHWUMU-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

L MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.229
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 101.50 α = 90.00
b = 126.50 β = 90.00
c = 66.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-10-17
  • Released Date: 1999-02-09
  • Deposition author(s): Higuchi, Y., Yasuoka, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4