1H21

A NOVEL IRON CENTRE IN THE SPLIT-SORET CYTOCHROME C FROM DESULFOVIBRIO DESULFURICANS ATCC 27774

Structural Biology Knowledgebase: 1H21 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1H21

Classification: CYTOCHROME

Total Structure Weight: 112706.64

Macromolecule Entities
Molecule Chains Length Organism Details
SPLIT-SORET CYTOCHROME C A, B, C, D 247 Desulfovibrio desulfuricans Mutation: Y86C, A171C
Gene Name(s): Ddes_2150
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEC
Query on HEC

A, B, C, D HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.199
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.06 α = 90.00
b = 100.13 β = 90.00
c = 109.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-30
  • Released Date: 2003-02-20
  • Deposition author(s): Abreu, I.A., Lourenco, A.I., Xavier, A.V., Legall, J., Coelho, A.V., Matias, P.M., Pinto, D.M., Carrondo, M.A., Teixeira, M., Saraiva, L.M.
  • Previous versions: 1DDC

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4