1H0C

The crystal structure of human alanine:glyoxylate aminotransferase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1H0C

Classification: TRANSFERASE

Total Structure Weight: 43953.61

Macromolecule Entities
Molecule Chains Length Organism Details
SERINE--GLYOXYLATE AMINOTRANSFERASE A 392 Homo sapiens EC#: 2.6.1.51 IUBMB
Details: LYSINE - PYRIDOXAL PHOSPHATE AT A 209
Gene Name(s): AGXT Gene View AGT1 SPAT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AOA
Query on AOA

A (AMINOOXY)ACETIC ACID
C2 H5 N O3
NQRKYASMKDDGHT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.231
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 90.33 α = 90.00
b = 90.33 β = 90.00
c = 142.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-17
  • Released Date: 2003-06-12
  • Deposition author(s): Zhang, X., Danpure, C.J., Roe, S.M., Pearl, L.H.

Revision History

  • Version 1_0: 2003-06-12

    Type: Initial release

  • Version 1_1: 2011-10-12

    Type: Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance