1GZ8

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR 2-Amino-6-(3'-methyl-2'-oxo)butoxypurine

Structural Biology Knowledgebase: 1GZ8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.151

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GZ8

Classification: TRANSFERASE

Total Structure Weight: 34270.05

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A 299 Homo sapiens EC#: 2.7.11.22 IUBMB
Details: COMPLEX WITH CYCLIN A OR CYCLIN E
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MBP
Query on MBP

A 1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]- 3-METHYL-2-BUTANOL
C10 H13 N5 O2
BEXUQVHWMLPYKY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.151
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.86 α = 90.00
b = 71.07 β = 90.00
c = 71.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-17
  • Released Date: 2003-06-12
  • Deposition author(s): Davies, T., Endicott, J., Johnson, L., Noble, M., Tucker, J.

Revision History

  • 2014-11-05
    Type: Geometry validation | Details: REMARK 500
  • 2014-11-05
    Type: Other | Details: ANISOU,REMARK 525,REMARK 280,MODRES
  • 2014-11-05
    Type: Non-polymer description | Details: HET,HETSYN,FORMUL,HETNAM
  • 2014-11-05
    Type: Linkage | Details: LINK
  • 2014-11-05
    Type: Version format compliance | Details: REMARK 4
  • 2014-11-05
    Type: Polymer description | Details: SEQRES
  • 2014-11-05
    Type: Atom nomenclature | Details: HETATM
  • 2014-11-05
    Type: Biological assembly | Details: REMARK 300,REMARK 350