1GVC

18KDA N-II DOMAIN FRAGMENT OF DUCK OVOTRANSFERRIN + NTA

Structural Biology Knowledgebase: 1GVC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 1GVC

Classification: IRON TRANSPORT

Total Structure Weight: 17523.59

Macromolecule Entities
Molecule Chains Length Organism Details
OVOTRANSFERRIN A 157 Anas platyrhynchos Fragment: N-II FRAGMENT, RESIDUES 91-247
Mutation: E139G, I150S, S151V, I169T
Details: COMPLEX OF DUCK OVOTRANSFERRIN FRAGMENT AND NTA
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NTA
Query on NTA

A NITRILOTRIACETIC ACID
C6 H9 N O6
MGFYIUFZLHCRTH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO3
Query on CO3

A CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.185
  • Space Group: P 31
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.41 α = 90.00
b = 41.41 β = 90.00
c = 81.45 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-07
  • Released Date: 2002-02-12
  • Deposition author(s): Kuser, P., Hall, D.R., Haw, M.L., Neu, M., Lindley, P.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4