1GTF

THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A 53-NUCLEOTIDE RNA MOLECULE CONTAINING GAGUU REPEATS

Structural Biology Knowledgebase: 1GTF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GTF

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 204063.70


Macromolecule Entities
Molecule Chains Length Organism Details
TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, VA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V 74 Geobacillus stearothermophilus Details: TWO PROTEIN 11-MERS (CHAINS A TO K AND L TO V), RESIDUES 1 - 75 IN EACH CHAIN (SOME N- AND C-TERMINAL RESIDUES MISSING DUE TO DISORDER)
Gene Name(s): mtrB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
(GAGUU)10GAG 53-NUCLEOTIDE RNA W 55 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRP
Query on TRP

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V TRYPTOPHAN
C11 H12 N2 O2
QIVBCDIJIAJPQS-VIFPVBQESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.194
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 142.08 α = 90.00
b = 111.49 β = 117.28
c = 138.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-15
  • Released Date: 2002-04-05
  • Deposition author(s): Hopcroft, N.H., Wendt, A.L., Gollnick, P., Antson, A.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor