Crystal structure of a POU/HMG/DNA ternary complex
DOI:10.2210/pdb1gt0/pdb   NDB ID: NA0261
1GT0
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 42898.30
    Molecule: 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3'
    Polymer: 1 Type: dna Length: 24
    Chains: A
    Details: FGF-4 ENHANCER
    Organism: Mus musculus
    Molecule: 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'
    Polymer: 2 Type: dna Length: 24
    Chains: B
    Details: FGF-4 ENHANCER
    Organism: Mus musculus
    Molecule: OCTAMER-BINDING TRANSCRIPTION FACTOR 1
    Polymer: 3 Type: protein Length: 159
    Chains: C
    Fragment: POU DOMAIN RESIDUES 280-438
    Mutation: YES
    Organism: Homo sapiens
    Gene Names: Gene View for POU2F1 OCT1 OTF1
    UniProtKB: Protein Feature View | Search PDB | P14859  
    Molecule: TRANSCRIPTION FACTOR SOX-2
    Polymer: 4 Type: protein Length: 80
    Chains: D
    Fragment: HMG DOMAIN RESIDUES 41-120
    Organism: Mus musculus
    Gene Names: Sox2 Sox-2
    UniProtKB: Protein Feature View | Search PDB | P48432  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (Mus musculus)   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct (Mus musculus)   Taxonomy    
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1CQT   CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT 
    1E3O   CRYSTAL STRUCTURE OF OCT-1 POU DIMER BOUND TO MORE 
    1HF0   CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF OCT-1 BOUND TO DNA AS A DIMER 
    1OCT   OCT-1 (POU DOMAIN) 
    1POG    
    1POU   OCT-1 (POU-SPECIFIC DOMAIN) (NMR, 20 STRUCTURES) 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA0261
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Remenyi, A.,  Wilmanns, M.

    Deposition:   2002-01-09
    Release:   2003-01-30
    Last Modified (REVDAT):   2012-11-14
     
  •   Revision History    Hide
    Mouse over text for details
    2012-11-14
    Refinement description
    2012-11-14
    Non-polymer description
    2012-11-14
    Biological assembly
    2012-11-14
    Other
    2012-11-14
    Sequence database correspondence
    2012-11-14
    Geometry validation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.60
    R-Value: 0.232 (obs.)
    R-Free: 0.285
    Space Group: P 31 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 72.80 α = 90.00 
    b = 72.80 β = 90.00 
    c = 172.40 γ = 120.00