1GQM

THE STRUCTURE OF S100A12 IN A HEXAMERIC FORM

Structural Biology Knowledgebase: 1GQM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1GQM

Classification: ANTIMICROBIAL PROTEIN

Total Structure Weight: 126974.29

Macromolecule Entities
Molecule Chains Length Organism Details
CALGRANULIN C A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 91 Homo sapiens Gene Name(s): S100A12 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B, C, D, E, F, G, H, I, J, K, L CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.217
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.88 α = 90.00
b = 100.50 β = 94.55
c = 112.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-26
  • Released Date: 2002-02-28
  • Deposition author(s): Moroz, O.V., Antson, A.A., Dodson, E.G., Burrel, H.J., Grist, S.J., Lloyd, R.M., Maitland, N.J., Dodson, G.G., Wilson, K.S., Lukanidin, E., Bronstein, I.B.

Revision History

  • 2011-09-28
    Type: Non-polymer description | Details: FORMUL
  • 2011-09-28
    Type: Atom nomenclature | Details: HETATM
  • 2011-09-28
    Type: Biological assembly | Details: REMARK 350
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4