1GNY

XYLAN-BINDING MODULE CBM15

Structural Biology Knowledgebase: 1GNY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 1GNY

Classification: CARBOHYDRATE-BINDING MODULE

Total Structure Weight: 16686.25

Macromolecule Entities
Molecule Chains Length Organism Details
XYLANASE 10C A 153 Cellvibrio japonicus EC#: 3.2.1.8 IUBMB
Fragment: CARBOHYDRATE BINDING MODULE 15, RESIDUES (91-244)
Gene Name(s): xyn10C xynF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XYP
Query on XYP

A BETA-D-XYLOPYRANOSE
C5 H10 O5
SRBFZHDQGSBBOR-KKQCNMDGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.150
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.15 α = 90.00
b = 60.12 β = 102.78
c = 33.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-10
  • Released Date: 2001-11-29
  • Deposition author(s): Szabo, S., Jamal, S., Xie, H., Charnock, S.J., Bolam, D.N., Gilbert, H.J., Davies, G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4