1GNM

HIV-1 PROTEASE MUTANT WITH VAL 82 REPLACED BY ASP (V82D) COMPLEXED WITH U89360E (INHIBITOR)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 1GNM

Classification: HYDROLASE (ACID PROTEASE)

Total Structure Weight: 22832.95

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: V82D
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
U0E
Query on U0E

A N-[[1-[N-ACETAMIDYL]-[1-CYCLOHEXYLMETHYL- 2-HYDROXY-4-ISOPROPYL]-BUT-4-YL]-CARBONYL]- GLUTAMINYL-ARGINYL-AMIDE
C28 H52 N8 O6
XTOQWMLQBSGKOK-VUBDRERZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
U0E N/A in BindingDB
Ki: 560 nM  BindingMOAD
Ki: 560 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed:
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 63.17 α = 90.00
b = 63.17 β = 90.00
c = 83.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-05-04
  • Released Date: 1996-11-08
  • Deposition author(s): Hong, L., Treharne, A., Hartsuck, J.A., Foundling, S., Tang, J.

Revision History

  • 2008-03-03
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance