1GJP

SCHIFF-BASE COMPLEX OF YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE WITH 4-OXOSEBACIC ACID

Structural Biology Knowledgebase: 1GJP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.265

Literature

Macromolecules
Sequence Display for 1GJP

Classification: DEHYDRATASE

Total Structure Weight: 37823.90

Macromolecule Entities
Molecule Chains Length Organism Details
5-AMINOLAEVULINIC ACID DEHYDRATASE A 340 Saccharomyces cerevisiae EC#: 4.2.1.24 IUBMB
Details: SCHIFF-BASE LINK BETWEEN 4-OXOSEBACIC ACID SUBSTRATE (HET GROUP A363) AND LYSINE 263
Gene Name(s): HEM2 YGL040C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4OX
Query on 4OX

A 4-OXODECANEDIOIC ACID
4-OXOSEBACIC ACID (Synonym)
C10 H16 O5
XTQIBFVBYWIHIP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.265
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.50 α = 90.00
b = 103.50 β = 90.00
c = 168.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-01
  • Released Date: 2001-08-02
  • Deposition author(s): Erskine, P.T., Coates, L., Newbold, R., Brindley, A.A., Wood, S.P., Warren, M.J., Cooper, J.B., Shoolingin-Jordan, P.M., Neier, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4