NMR Ensemble

1GJ1

NMR structure of d(CCAAAGXACTGGG), X is a 3'phosphoglycolate, 5'phosphate gapped lesion

Structural Biology Knowledgebase: 1GJ1 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 1
  • Selection Criteria: Minimum Rmsd and NMR Constraints Violation

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GJ1

Classification: DNA

Total Structure Weight: 7750.14

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*AP*AP*AP*G)-3' A 6 synthetic
5'-D(P*AP*CP*TP*GP*GP*G)-3' B 6 synthetic
5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' C 13 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGA
Query on PGA

A 2-PHOSPHOGLYCOLIC ACID
C2 H5 O6 P
ASCFNMCAHFUBCO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 1
  • Selection Criteria: MINIMUM RMSD AND NMR CONSTRAINTS VIOLATION

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-10-14
  • Released Date: 2003-01-07
  • Deposition author(s): Junker, H.-D., Hoehn, S.T., Bunt, R.C., Marathius, V., Chen, J., Turner, C.J., Stubbe, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4