1GGM

GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH GLYCYL-ADENYLATE

Structural Biology Knowledgebase: 1GGM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.334
  • R-Value Work: 0.242

Literature

Macromolecules
Sequence Display for 1GGM

Classification: LIGASE

Total Structure Weight: 103099.71

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (GLYCYL-TRNA SYNTHETASE) A, B 442 Thermus thermophilus EC#: 6.1.1.14 IUBMB
Mutation: ΔR92, ΔI93, T91A, K93A
Gene Name(s): glyQS glyS TTHA0543
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GAP
Query on GAP

A, B GLYCYL-ADENOSINE-5'-PHOSPHATE
C12 H17 N6 O8 P
HROXHMRQKGGIFT-JJNLEZRASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.334
  • R-Value Work: 0.242
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 122.50 α = 90.00
b = 250.10 β = 90.00
c = 106.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-01-27
  • Released Date: 1999-01-28
  • Deposition author(s): Arnez, J.G., Moras, D.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values