1G7U

CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEX WITH SUBSTRATE PHOSPHOENOL PYRUVATE

Structural Biology Knowledgebase: 1G7U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1G7U

Classification: LYASE

Total Structure Weight: 31081.02

Macromolecule Entities
Molecule Chains Length Organism Details
2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE A 284 Escherichia coli EC#: 2.5.1.55 IUBMB
Mutation: G211V
Gene Name(s): kdsA b1215 JW1206
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEP
Query on PEP

A PHOSPHOENOLPYRUVATE
C3 H5 O6 P
DTBNBXWJWCWCIK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.228
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 117.90 α = 90.00
b = 117.90 β = 90.00
c = 117.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-14
  • Released Date: 2001-05-16
  • Deposition author(s): Asojo, O.A., Friedman, J.M., Belakhov, V., Shoham, Y., Adir, N., Baasov, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values