1G5N

ANNEXIN V COMPLEX WITH HEPARIN OLIGOSACCHARIDES

Structural Biology Knowledgebase: 1G5N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1G5N

Classification: BLOOD CLOTTING

Total Structure Weight: 38296.13

Macromolecule Entities
Molecule Chains Length Organism Details
ANNEXIN V A 318 Rattus norvegicus Gene Name(s): Anxa5 Anx5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SGN
Query on SGN

A N,O6-DISULFO-GLUCOSAMINE
C6 H13 N O11 S2
DQTRACMFIGDHSN-UKFBFLRUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IDS
Query on IDS

A 2-O-sulfo-alpha-L-idopyranuronic acid
O2-SULFO-GLUCURONIC ACID (Synonym)
C6 H10 O10 S
COJBCAMFZDFGFK-VCSGLWQLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UAP
Query on UAP

A 4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid
C6 H8 O9 S
VJIMUKBSNUBECH-YKKSOZKNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.208
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 155.87 α = 90.00
b = 155.87 β = 90.00
c = 37.34 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-01
  • Released Date: 2001-06-06
  • Deposition author(s): Capila, I., Heraiz, M.J., Mo, Y.D., Mealy, T.R., Campos, B., Dedman, J.R., Linhardt, R.J., Seaton, B.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update