1G5G

FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS

Structural Biology Knowledgebase: 1G5G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1G5G

Classification: Viral protein

Total Structure Weight: 310966.72

Macromolecule Entities
Molecule Chains Length Organism Details
FUSION PROTEIN A, B, C..., D, E, FA, B, C, D, E, F 481 Avian avulavirus 1 Fragment: FULL-LENGTH ECTODOMAIN (RESIDUES L32-R501) FOLLOWED BY C-MYC PURIFICATION TAG
Mutation: D170N, G265S, A500S, L501R
Gene Name(s): F
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D, E, F N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.224
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 134.39 α = 90.00
b = 308.33 β = 90.00
c = 243.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-01
  • Released Date: 2002-02-27
  • Deposition author(s): Lawrence, M.C., Smith, B.J.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4