1G1L

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TDP-GLUCOSE COMPLEX.

Structural Biology Knowledgebase: 1G1L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 1G1L

Classification: TRANSFERASE

Total Structure Weight: 271535.88

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 293 Pseudomonas aeruginosa EC#: 2.7.7.24 IUBMB
Gene Name(s): rmlA PA5163
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAU
Query on DAU

A, B, C, D, E, F, G, H 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE
C16 H26 N2 O16 P2
YSYKRGRSMLTJNL-URARBOGNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F, G, H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.156
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.57 α = 89.94
b = 73.41 β = 80.61
c = 134.29 γ = 80.93

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-12
  • Released Date: 2000-12-27
  • Deposition author(s): Blankenfeldt, W., Asuncion, M., Lam, J.S., Naimsmith, J.H.

Revision History

  • 2012-05-23
    Type: Atom nomenclature | Details: --
  • 2012-05-23
    Type: Refinement description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4