1FZB

CRYSTAL STRUCTURE OF CROSSLINKED FRAGMENT D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.241

Literature

Macromolecules
Sequence Display for 1FZB

Classification: BLOOD COAGULATION

Total Structure Weight: 169696.03

Macromolecule Entities
Molecule Chains Length Organism Details
FIBRINOGEN A, D 87 Homo sapiens Fragment: DOUBLE FRAGMENT D
Gene Name(s): FGA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FIBRINOGEN B, E 328 Homo sapiens Fragment: DOUBLE FRAGMENT D
Gene Name(s): FGB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FIBRINOGEN C, F 319 Homo sapiens Fragment: DOUBLE FRAGMENT D
Mutation: I88K
Gene Name(s): FGG Gene View PRO2061
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PEPTIDE LIGAND GPRG G, H 4 synthetic Details: BOUND PEPTIDE CAUSES THE FIBRIN CLOT CONFORMATION

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B, E N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

C, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.241
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 93.82 α = 90.00
b = 95.50 β = 96.08
c = 113.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-08-05
  • Released Date: 1997-12-03
  • Deposition author(s): Spraggon, G., Everse, S.J., Doolittle, R.F.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance