1FS9

CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES-AZIDE COMPLEX

Structural Biology Knowledgebase: 1FS9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1FS9

Classification: OXIDOREDUCTASE

Total Structure Weight: 61036.34

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C NITRITE REDUCTASE A 507 Wolinella succinogenes EC#: 1.7.2.2 IUBMB
Mutation: K45E
Gene Name(s): nrfA WS0969
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Y1
Query on Y1

A YTTRIUM ION
Y
KAJPZYFHSCFBCI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AZI
Query on AZI

A AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.180
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 119.53 α = 90.00
b = 119.53 β = 90.00
c = 186.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-08
  • Released Date: 2001-01-17
  • Deposition author(s): Einsle, O., Stach, P., Messerschmidt, A., Simon, J., Kroeger, A., Huber, R., Kroneck, P.M.H.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4