1FPY

CRYSTAL STRUCTURE OF GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM WITH INHIBITOR PHOSPHINOTHRICIN

Structural Biology Knowledgebase: 1FPY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.248

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FPY

Classification: LIGASE

Total Structure Weight: 629558.06

Macromolecule Entities
Molecule Chains Length Organism Details
GLUTAMINE SYNTHETASE A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 468 Salmonella enterica EC#: 6.3.1.2 IUBMB
Gene Name(s): glnA STM4007
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C, D, E, F, G, H, I, J, K, L ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PPQ
Query on PPQ

A, B, C, D, E, F, G, H, I, J, K, L PHOSPHINOTHRICIN
2-AMINO-4-(HYDROXYMETHYL-PHOSPHINYL)BUTANOIC ACID (Synonym)
C5 H12 N O4 P
IAJOBQBIJHVGMQ-BYPYZUCNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D, E, F, G, H, I, J, K, L MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PPQ N/A in BindingDB
N/A in BindingMoad
Ki: 1000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.248
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 230.60 α = 90.00
b = 132.50 β = 102.40
c = 195.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-31
  • Released Date: 2001-04-04
  • Deposition author(s): Gill, H.S., Eisenberg, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4