1FNG

HISTOCOMPATIBILITY ANTIGEN

Structural Biology Knowledgebase: 1FNG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 1FNG

Classification: IMMUNE SYSTEM

Total Structure Weight: 96802.72

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) A, C 192 Mus musculus Fragment: SOLUBLE ECTO-DOMAIN
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (MHC CLASS II I-EK, BETA CHAIN) B, D 224 Mus musculus Fragment: SOLUBLE ECTO-DOMAIN PLUS COVALENTLY ATTACHED HB PEPTIDE
Details: WITH COVALENTLY BOUND HB PEPTIDE
Gene Name(s): Hbb-b2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.221
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 147.14 α = 90.00
b = 57.02 β = 91.97
c = 116.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-21
  • Released Date: 2001-03-07
  • Deposition author(s): Miley, M.J., Nelson, C.A., Fremont, D.H.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4