1FIR

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)

Structural Biology Knowledgebase: 1FIR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FIR

Classification: RNA

Total Structure Weight: 24894.54

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) A 76 Bos taurus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 9 Unique
ID Chains Type Formula 2D Diagram Parent
2MG
Query on 2MG
A RNA LINKING C11 H16 N5 O8 P G
H2U
Query on H2U
A RNA LINKING C9 H15 N2 O9 P U
PSU
Query on PSU
A RNA LINKING C9 H13 N2 O9 P U
70U
Query on 70U
A RNA LINKING C12 H17 N2 O10 P S U
12A
Query on 12A
A RNA LINKING C16 H23 N6 O11 P S A
7MG
Query on 7MG
A RNA LINKING C11 H18 N5 O8 P G
5MC
Query on 5MC
A RNA LINKING C10 H16 N3 O8 P C
2MU
Query on 2MU
A RNA LINKING C11 H17 N2 O9 P U
1MA
Query on 1MA
A RNA LINKING C11 H16 N5 O7 P A

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.181
  • Space Group: P 32 1 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 100.72 α = 90.00
b = 100.72 β = 90.00
c = 82.61 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-08-06
  • Released Date: 2001-01-17
  • Deposition author(s): Benas, P., Dumas, P.

Revision History

  • 2014-04-09
    Type: Linkage | Details: update LINK records
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4