1FIH
N-ACETYLGALACTOSAMINE BINDING MUTANT OF MANNOSE-BINDING PROTEIN A (QPDWG-HDRPY), COMPLEX WITH N-ACETYLGALACTOSAMINE
- PDB DOI: https://doi.org/10.2210/pdb1FIH/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Rattus norvegicus
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2000-08-03 Released: 2000-08-23 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.269 
- R-Value Work: 0.237 
- R-Value Observed: 0.237 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MANNOSE-BINDING PROTEIN A | 154 | Rattus norvegicus | Mutation(s): 9  | ||
UniProt | |||||
Find proteins for P19999 (Rattus norvegicus) Explore P19999  Go to UniProtKB:  P19999 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P19999 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NGA Query on NGA | D [auth A], I [auth B], N [auth C], O [auth C] | 2-acetamido-2-deoxy-beta-D-galactopyranose C8 H15 N O6 OVRNDRQMDRJTHS-JAJWTYFOSA-N | |||
CA Query on CA | E [auth A] F [auth A] G [auth A] J [auth B] K [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | H [auth A], M [auth B], S [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.269 
- R-Value Work: 0.237 
- R-Value Observed: 0.237 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 81.49 | α = 90 |
b = 84.552 | β = 105.43 |
c = 98.542 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | refinement |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2000-08-23  Deposition Author(s): Feinberg, H., Torgerson, D., Drickamer, K., Weis, W.I.
Revision History (Full details and data files)
- Version 1.0: 2000-08-23
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-03-14
Changes: Database references - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.5: 2021-11-03
Changes: Database references, Structure summary