1FDZ

N-ACETYLNEURAMINATE LYASE IN COMPLEX WITH PYRUVATE VIA BOROHYDRIDE REDUCTION

Structural Biology Knowledgebase: 1FDZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Observed: 0.200

Literature

Macromolecules
Sequence Display for 1FDZ

Classification: LYASE

Total Structure Weight: 130858.77

Macromolecule Entities
Molecule Chains Length Organism Details
N-ACETYLNEURAMINATE LYASE A, B, C, D 297 Escherichia coli EC#: 4.1.3.3 IUBMB
Mutation: A70G, S84T
Details: COVALENT COMPLEX, OBTAINED BY REDUCTION WITH BOROHYDRIDE FROM AN ENZYME - SIALIC ACID MIX
Gene Name(s): nanA npl b3225 JW3194
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PYR
Query on PYR

A, B, C, D PYRUVIC ACID
C3 H4 O3
LCTONWCANYUPML-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Observed: 0.200
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 121.00 α = 90.00
b = 121.00 β = 90.00
c = 196.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-07-08
  • Released Date: 1997-10-22
  • Deposition author(s): Lawrence, M.C., Barbosa, J.A.R.G., Smith, B.J., Hall, N.E., Pilling, P.A., Ooi, H.C., Marcuccio, S.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4