1F58

IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 24-RESIDUE PEPTIDE (RESIDUES 308-333 OF HIV-1 GP120 (MN ISOLATE) WITH ALA TO AIB SUBSTITUTION AT POSITION 323

Structural Biology Knowledgebase: 1F58 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1F58

Classification: Viral protein / Immune system

Total Structure Weight: 51163.34

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) L 216 Mus musculus Mutation: E1D, L2I, R24K, K27Q, S27AG, S27CD, A27DF, S28D, Y30A, I31S, Y32F, H34N, S49F, L50A, T52S, N53T, V58I, S65R, V83A, H90Q, R92H, L94D
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) H 228 Mus musculus Mutation: E6Q, G10D, V29I, E32G, A34S, N35AH, L48M, N52H, G55A, S56G, S58N, D94R, R95E, S96E, W97A, F98M, A99P, L108T, A113S, T198P, W199R
Gene Name(s): Igh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (EXTERIOR MEMBRANE GLYCOPROTEIN(GP120)) P 23 Human immunodeficiency virus 1 Fragment: RESIDUES 308-332 FROM HIV-1 GP120
Mutation: A323X
Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
AIB
Query on AIB
P L-PEPTIDE LINKING C4 H9 N O2 ALA

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.196
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.89 α = 90.00
b = 71.91 β = 98.31
c = 88.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-10-21
  • Released Date: 1999-02-02
  • Deposition author(s): Stanfield, R.L., Cabezas, E., Satterthwait, A.C., Stura, E.A., Profy, A.T., Wilson, I.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4