1F1R

CRYSTAL STRUCTURE OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM ARTHROBACTER GLOBIFORMIS (NATIVE, NON-CRYO)

Structural Biology Knowledgebase: 1F1R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 1F1R

Classification: OXIDOREDUCTASE

Total Structure Weight: 74095.17

Macromolecule Entities
Molecule Chains Length Organism Details
HOMOPROTOCATECHUATE 2,3-DIOXYGENASE A, B 323 Arthrobacter globiformis EC#: 1.13.11.15 IUBMB
Mutation: R234A, P235L, C236R, A237I, A239D, T240R, G241I, S242E, N243R, R246G, P247R, A248H, P249G
Gene Name(s): mndD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.156
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 138.44 α = 90.00
b = 59.15 β = 118.26
c = 102.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-19
  • Released Date: 2003-06-10
  • Deposition author(s): Vetting, M.W., Lipscomb, J.D., Wackett, L.P., Que Jr., L., Ohlendorf, D.H.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4