1F0J

CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 4B2B

Structural Biology Knowledgebase: 1F0J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1F0J

Classification: HYDROLASE

Total Structure Weight: 87196.02

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHODIESTERASE 4B A, B 377 Homo sapiens EC#: 3.1.4.53 IUBMB
Fragment: CATALYTIC DOMAIN
Mutation: S487A, S489A
Gene Name(s): PDE4B Gene View DPDE4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ARS
Query on ARS

A, B ARSENIC
As
RBFQJDQYXXHULB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.204
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 104.54 α = 90.00
b = 159.58 β = 90.00
c = 109.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-16
  • Released Date: 2000-07-26
  • Deposition author(s): Xu, R.X., Hassell, A.M., Vanderwall, D., Lambert, M.H., Holmes, W.D., Luther, M.A., Rocque, W.J., Milburn, M.V., Zhao, Y., Ke, H., Nolte, R.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4