1EM0

COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN

Structural Biology Knowledgebase: 1EM0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.9 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 1EM0

Classification: DNA

Total Structure Weight: 9072.17

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*(CBR)P*CP*TP*AP*GP*G)-3') A, B, C, D 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PNI
Query on PNI

B, D TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL
C44 H36 N8 Ni
KZZFAYDWICISAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBR
Query on CBR
A, B, C, D DNA LINKING C9 H13 Br N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.9 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.152
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 32.21 α = 90.00
b = 32.21 β = 90.00
c = 62.26 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-03-14
  • Released Date: 2000-08-21
  • Deposition author(s): Neidle, S., Sanderson, M., Bennett, M., Krah, A., Wien, F., Garman, E., McKenna, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4