1EK2

CRYSTAL STRUCTURE OF MURINE SOLUBLE EPOXIDE HYDROLASE COMPLEXED WITH CDU INHIBITOR

Structural Biology Knowledgebase: 1EK2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 1EK2

Classification: HYDROLASE

Total Structure Weight: 125730.20

Macromolecule Entities
Molecule Chains Length Organism Details
EPOXIDE HYDROLASE A, B 554 Mus musculus EC#: 3.3.2.3 IUBMB
Gene Name(s): Ephx2 Eph2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CDU
Query on CDU

A, B N-CYCLOHEXYL-N'-DECYLUREA
C17 H34 N2 O
LPXYBLIRYGCMPQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CDU IC50: 50 nM (100) BindingDB

N/A in BindingMoad
Ki: 6.3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.211
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 151.90 α = 90.00
b = 143.00 β = 90.00
c = 60.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-06
  • Released Date: 2000-05-31
  • Deposition author(s): Argiriadi, M.A., Morisseau, C., Goodrow, M.H., Dowdy, D.L., Hammock, B.D., Christianson, D.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4