1E9L

The crystal structure of novel mammalian lectin Ym1 suggests a saccharide binding site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1E9L

Classification: MACROPHAGE SECRETORY PROTEIN

Total Structure Weight: 42544.69

Macromolecule Entities
Molecule Chains Length Organism Details
YM1 SECRETORY PROTEIN A 377 Mus musculus EC#: 3.2.1.52 IUBMB
Gene Name(s): Chil3 Chi3l3 Ym1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GCS
Query on GCS

A D-GLUCOSAMINE
2-AMINO-2-DEOXY-D-GLUCOSE (Synonym)
C6 H13 N O5
MSWZFWKMSRAUBD-QZABAPFNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.198
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 51.34 α = 90.00
b = 60.66 β = 94.61
c = 60.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-21
  • Released Date: 2001-03-01
  • Deposition author(s): Hsiao, C.D., Sun, Y.J.

Revision History

  • Version 1_0: 2001-03-01

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance