1E8V

STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE

Structural Biology Knowledgebase: 1E8V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 1E8V

Classification: HYDROLASE

Total Structure Weight: 101465.65

Macromolecule Entities
Molecule Chains Length Organism Details
HEMAGGLUTININ-NEURAMINIDASE A, B 454 Newcastle disease virus EC#: 3.2.1.18 IUBMB
Fragment: HEAD DOMAIN, RESIDUES 124-577
Gene Name(s): HN
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAN
Query on DAN

A, B 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID
C11 H17 N O8
JINJZWSZQKHCIP-UFGQHTETSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.232
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 137.46 α = 90.00
b = 137.46 β = 90.00
c = 116.60 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-01
  • Released Date: 2001-04-03
  • Deposition author(s): Crennell, S., Takimoto, T., Portner, A., Taylor, G.

Revision History

  • 2011-11-09
    Type: Function and keywords | Details: KEYWDS
  • 2011-11-09
    Type: Other | Details: HEADER,REMARK 525,REMARK 280
  • 2011-11-09
    Type: Atom nomenclature | Details: HETATM
  • 2011-11-09
    Type: Advisory | Details: CAVEAT
  • 2011-11-09
    Type: Geometry validation | Details: REMARK 500
  • 2011-11-09
    Type: Version format compliance | Details: REMARK 4
  • 2011-11-09
    Type: Polymer description | Details: COMPND
  • 2011-11-09
    Type: Refinement description | Details: REMARK 3
  • 2011-11-09
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-11-09
    Type: Non-polymer description | Details: HETSYN,FORMUL,HETNAM,HET
  • 2011-11-09
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-11-09
    Type: Linkage | Details: LINK