Alu domain of the mammalian SRP (potential Alu retroposition intermediate)
DOI:10.2210/pdb1e8s/pdb   NDB ID: 1E8S
1E8S
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Alu Ribonucleoprotein Particle
    Structure Weight: 50905.96
    Molecule: SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
    Polymer: 1 Type: protein Length: 85
    Chains: A
    Organism: Homo sapiens
    Gene Name: Gene View for SRP9
    UniProtKB: Search PDB | P49458   Protein Feature View
    Molecule: SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN
    Polymer: 2 Type: protein Length: 106
    Chains: B
    Fragment: TRUNCATED AFTER K107
    Organism: Homo sapiens
    Gene Name: Gene View for SRP14
    UniProtKB: Search PDB | P37108   Protein Feature View
    Molecule: 7SL RNA, 88-MER
    Polymer: 3 Type: rna Length: 88
    Chains: C
    Fragment: ALU RNA
    Mutation: YES
    Details: G101-U164 AND A383-U399 OF 7SL RNA CIRCULAR PERMUTATION (G101 LINKED TO U399) ADDITIONAL
    Organism: Homo sapiens
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1E8O   CORE OF THE ALU DOMAIN OF THE MAMMALIAN SRP 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    EU3
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    EU3 Eu
    EUROPIUM (III) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:1E8S
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Weichenrieder, O.,  Wild, K.,  Strub, K.,  Cusack, S.

    Deposition:   2000-09-29
    Release:   2000-11-08
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   4.00
    R-Value: 0.388 (obs.)
    R-Free: n/a
    Space Group: P 42 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 143.33 α = 90.00 
    b = 143.33 β = 90.00 
    c = 60.36 γ = 90.00