POP-OUT | CLOSE
 
CORE OF THE ALU DOMAIN OF THE MAMMALIAN SRP
DOI:10.2210/pdb1e8o/pdb   NDB ID: 1E8O
1E8O
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Alu Ribonucleoprotein Particle
    Structure Weight: 60787.75
    Molecule: SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
    Polymer: 1 Type: protein Length: 85
    Chains: A, C
    Organism: Homo sapiens
    Gene Name: Gene View for SRP9
    UniProtKB: Protein Feature View | Search PDB | P49458  
    Molecule: SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN
    Polymer: 2 Type: protein Length: 106
    Chains: B, D
    Fragment: TRUNCATED AFTER K107
    Organism: Homo sapiens
    Gene Name: Gene View for SRP14
    UniProtKB: Protein Feature View | Search PDB | P37108  
    Molecule: 7SL RNA
    Polymer: 3 Type: rna Length: 50
    Chains: E
    Fragment: ALU RNA 5' DOMAIN
    Mutation: YES
    Details: G1-U47 OF 7SL RNA PLUS A 5'GG AND A 3'C
    Organism: Homo sapiens
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4
    Search 
    Download 
    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    GDP
    Search 
    GDP C10 H15 N5 O11 P2 G rnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 1E8O
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 generated by PQS (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Weichenrieder, O.,  Wild, K.,  Strub, K.,  Cusack, S.

    Deposition:   2000-09-28
    Release:   2000-11-08
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.20
    R-Value: 0.245 (obs.)
    R-Free: 0.291
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 57.45 α = 90.00 
    b = 186.62 β = 90.00 
    c = 189.82 γ = 90.00