1E80

Endothiapepsin complex with renin inhibitor MERCK-KGAA-EMD56133

Structural Biology Knowledgebase: 1E80 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1E80

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 34607.18

Macromolecule Entities
Molecule Chains Length Organism Details
ENDOTHIAPEPSIN E 330 Cryphonectria parasitica EC#: 3.4.23.22 IUBMB
Fragment: RESIDUES 90-419
Gene Name(s): EAPA EPN-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0GQ
Query on 0GQ

E 4-amino-N-{(1R,8R,9R,13R)-16-(4-amino-2-methylpyrimidin- 5-yl)-1-benzyl-8-(cyclohexylmethyl)-9-hydroxy- 13-[(1S)-1-methylpropyl]-2,6,11,14-tetraoxo- 3,7,12,15-tetraazahexadec-1-yl}piperidine- 1-carboxamide
C41 H64 N10 O6
HZSPXNCSLJOMIF-NQKKVWJDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000296
Query on PRD_000296
E MERCK-KGAA-EMD56133 Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.186
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 54.21 α = 90.00
b = 74.71 β = 109.46
c = 46.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-15
  • Released Date: 2000-09-26
  • Deposition author(s): Read, J.A., Cooper, J.B., Toldo, L., Rippmann, F., Raddatz, P.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence