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HMG-D COMPLEXED TO A BULGE DNA
DOI:10.2210/pdb1e7j/pdb   NDB ID: 1E7J
1E7J
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Protein/dna
    Structure Weight: 16453.07
    Molecule: HIGH MOBILITY GROUP PROTEIN D
    Polymer: 1 Type: protein Length: 74
    Chains: A
    Fragment: HMG-D DOMAIN
    Organism: Drosophila melanogaster
    Gene Names: HmgD CG17950
    UniProtKB: Protein Feature View | Search PDB | Q05783  
    Molecule: DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C)-3')
    Polymer: 2 Type: dna Length: 14
    Chains: B
    Molecule: DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3')
    Polymer: 3 Type: dna Length: 12
    Chains: C
     

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1QRV  CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DEOXYRIBONUCLEIC ACID 
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 1E7J
     
 
Data in orange boxes are gathered from external resources (when available).
 
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  •   Deposition Summary Hide
    Authors:   Cerdan, R.,  Payet, D.,  Yang, J.-C.,  Travers, A.A.,  Neuhaus, D.

    Deposition:   2000-08-29
    Release:   2001-03-05
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
      NMR Restraints
    NMR Restraint Grid  
    NMR Ensemble
    Conformers Calculated:     50
    Conformers Submitted:     10
    Selection Criteria: LOW VALUES OF THE NOE ENERGY TERM AND PROTEIN LOCATED WITHIN MINOR GROOVE OF DNA
    NMR Refine
    Method: SOLUTION NMR