1E7D

ENDONUCLEASE VII (ENDOVII) FROM PHAGE T4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 1E7D

Classification: HYDROLASE

Total Structure Weight: 36664.89

Macromolecule Entities
Molecule Chains Length Organism Details
RECOMBINATION ENDONUCLEASE VII A, B 157 Enterobacteria phage t4 sensu lato Details: ONE ZN BOUND TO CYS 23,26,58,61 OF EACH CHAIN CA LIGANDED TO ASP40 AND ASN 62
Gene Name(s): 49
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.245
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 60.90 α = 90.00
b = 37.40 β = 108.20
c = 74.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-28
  • Released Date: 2001-05-04
  • Deposition author(s): Raaijmakers, H.C.A., Vix, O., Toro, I., Suck, D.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance