1E1O

lysyl-tRNA Synthetase (LYSU) hexagonal form, complexed with lysine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1E1O

Classification: LIGASE

Total Structure Weight: 58651.14

Macromolecule Entities
Molecule Chains Length Organism Details
LYSYL-TRNA SYNTHETASE, HEAT INDUCIBLE A 504 Escherichia coli EC#: 6.1.1.6 IUBMB
Gene Name(s): lysU b4129 JW4090
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LYS
Query on LYS

A LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.195
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 143.10 α = 90.00
b = 143.10 β = 90.00
c = 176.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-09
  • Released Date: 2000-07-28
  • Deposition author(s): Desogus, G., Todone, F., Brick, P., Onesti, S.

Revision History

  • 2011-08-31
    Type: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary, Version format compliance
  • 2017-03-29
    Type: Derived calculations, Structure summary